Swarm incursions of reassortants of highly pathogenic avian influenza virus strains H5N8 and H5N5, clade 2.3.4.4b, Germany, winter 2016/17.
Identifieur interne : 000032 ( Main/Exploration ); précédent : 000031; suivant : 000033Swarm incursions of reassortants of highly pathogenic avian influenza virus strains H5N8 and H5N5, clade 2.3.4.4b, Germany, winter 2016/17.
Auteurs : Anne Pohlmann [Allemagne] ; Elke Starick [Allemagne] ; Christian Grund [Allemagne] ; Dirk Höper [Allemagne] ; Günter Strebelow [Allemagne] ; Anja Globig [Allemagne] ; Christoph Staubach [Allemagne] ; Franz J. Conraths [Allemagne] ; Thomas C. Mettenleiter [Allemagne] ; Timm Harder [Allemagne] ; Martin Beer [Allemagne]Source :
- Scientific reports [ 2045-2322 ] ; 2018.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Virus de la grippe A, Virus recombinants.
- virologie : Grippe humaine.
- épidémiologie : Allemagne, Grippe humaine.
- Animaux, Humains, Oiseaux, Phylogénie, Saisons, Variation génétique, Virus de la grippe A.
English descriptors
- KwdEn :
- MESH :
- classification : Influenza A virus.
- epidemiology : Germany, Influenza, Human.
- genetics : Influenza A virus, Reassortant Viruses.
- virology : Influenza, Human.
- Animals, Birds, Genetic Variation, Humans, Phylogeny, Seasons.
Abstract
The outbreak of highly pathogenic avian influenza H5Nx viruses in winter 2016/2017 was the most severe HPAI epizootic ever reported in Germany. The H5N8 and H5N5 viruses detected in birds in Germany in 2016/2017 represent a reassortant swarm of at least five distinct genotypes, which carried closely related HA segments derived from clade 2.3.4.4b. The genotypes of these viruses and their spatio-temporal distribution indicated a unique situation with multiple independent entries of HPAIV into Germany.
DOI: 10.1038/s41598-017-16936-8
PubMed: 29311555
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Swarm incursions of reassortants of highly pathogenic avian influenza virus strains H5N8 and H5N5, clade 2.3.4.4b, Germany, winter 2016/17.</title><author><name sortKey="Pohlmann, Anne" sort="Pohlmann, Anne" uniqKey="Pohlmann A" first="Anne" last="Pohlmann">Anne Pohlmann</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion></affiliation></author><author><name sortKey="Starick, Elke" sort="Starick, Elke" uniqKey="Starick E" first="Elke" last="Starick">Elke Starick</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion></affiliation></author><author><name sortKey="Grund, Christian" sort="Grund, Christian" uniqKey="Grund C" first="Christian" last="Grund">Christian Grund</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion></affiliation></author><author><name sortKey="Hoper, Dirk" sort="Hoper, Dirk" uniqKey="Hoper D" first="Dirk" last="Höper">Dirk Höper</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion></affiliation></author><author><name sortKey="Strebelow, Gunter" sort="Strebelow, Gunter" uniqKey="Strebelow G" first="Günter" last="Strebelow">Günter Strebelow</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion></affiliation></author><author><name sortKey="Globig, Anja" sort="Globig, Anja" uniqKey="Globig A" first="Anja" last="Globig">Anja Globig</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Epidemiology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Institute of Epidemiology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion></affiliation></author><author><name sortKey="Staubach, Christoph" sort="Staubach, Christoph" uniqKey="Staubach C" first="Christoph" last="Staubach">Christoph Staubach</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Epidemiology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Institute of Epidemiology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion></affiliation></author><author><name sortKey="Conraths, Franz J" sort="Conraths, Franz J" uniqKey="Conraths F" first="Franz J" last="Conraths">Franz J. Conraths</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Epidemiology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Institute of Epidemiology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion></affiliation></author><author><name sortKey="Mettenleiter, Thomas C" sort="Mettenleiter, Thomas C" uniqKey="Mettenleiter T" first="Thomas C" last="Mettenleiter">Thomas C. Mettenleiter</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Molecular Virology and Cell Biology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Institute of Molecular Virology and Cell Biology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion></affiliation></author><author><name sortKey="Harder, Timm" sort="Harder, Timm" uniqKey="Harder T" first="Timm" last="Harder">Timm Harder</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany. timm.harder@fli.de.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion></affiliation></author><author><name sortKey="Beer, Martin" sort="Beer, Martin" uniqKey="Beer M" first="Martin" last="Beer">Martin Beer</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2018">2018</date><idno type="RBID">pubmed:29311555</idno><idno type="pmid">29311555</idno><idno type="doi">10.1038/s41598-017-16936-8</idno><idno type="wicri:Area/Main/Corpus">000037</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000037</idno><idno type="wicri:Area/Main/Curation">000037</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000037</idno><idno type="wicri:Area/Main/Exploration">000037</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Swarm incursions of reassortants of highly pathogenic avian influenza virus strains H5N8 and H5N5, clade 2.3.4.4b, Germany, winter 2016/17.</title><author><name sortKey="Pohlmann, Anne" sort="Pohlmann, Anne" uniqKey="Pohlmann A" first="Anne" last="Pohlmann">Anne Pohlmann</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion></affiliation></author><author><name sortKey="Starick, Elke" sort="Starick, Elke" uniqKey="Starick E" first="Elke" last="Starick">Elke Starick</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion></affiliation></author><author><name sortKey="Grund, Christian" sort="Grund, Christian" uniqKey="Grund C" first="Christian" last="Grund">Christian Grund</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion></affiliation></author><author><name sortKey="Hoper, Dirk" sort="Hoper, Dirk" uniqKey="Hoper D" first="Dirk" last="Höper">Dirk Höper</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion></affiliation></author><author><name sortKey="Strebelow, Gunter" sort="Strebelow, Gunter" uniqKey="Strebelow G" first="Günter" last="Strebelow">Günter Strebelow</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion></affiliation></author><author><name sortKey="Globig, Anja" sort="Globig, Anja" uniqKey="Globig A" first="Anja" last="Globig">Anja Globig</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Epidemiology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Institute of Epidemiology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion></affiliation></author><author><name sortKey="Staubach, Christoph" sort="Staubach, Christoph" uniqKey="Staubach C" first="Christoph" last="Staubach">Christoph Staubach</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Epidemiology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Institute of Epidemiology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion></affiliation></author><author><name sortKey="Conraths, Franz J" sort="Conraths, Franz J" uniqKey="Conraths F" first="Franz J" last="Conraths">Franz J. Conraths</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Epidemiology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Institute of Epidemiology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion></affiliation></author><author><name sortKey="Mettenleiter, Thomas C" sort="Mettenleiter, Thomas C" uniqKey="Mettenleiter T" first="Thomas C" last="Mettenleiter">Thomas C. Mettenleiter</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Molecular Virology and Cell Biology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Institute of Molecular Virology and Cell Biology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion></affiliation></author><author><name sortKey="Harder, Timm" sort="Harder, Timm" uniqKey="Harder T" first="Timm" last="Harder">Timm Harder</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany. timm.harder@fli.de.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion></affiliation></author><author><name sortKey="Beer, Martin" sort="Beer, Martin" uniqKey="Beer M" first="Martin" last="Beer">Martin Beer</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion><wicri:noRegion>Riems</wicri:noRegion></affiliation></author></analytic><series><title level="j">Scientific reports</title><idno type="eISSN">2045-2322</idno><imprint><date when="2018" type="published">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>Birds</term><term>Genetic Variation</term><term>Germany (epidemiology)</term><term>Humans</term><term>Influenza A virus (classification)</term><term>Influenza A virus (genetics)</term><term>Influenza, Human (epidemiology)</term><term>Influenza, Human (virology)</term><term>Phylogeny</term><term>Reassortant Viruses (genetics)</term><term>Seasons</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Allemagne (épidémiologie)</term><term>Animaux</term><term>Grippe humaine (virologie)</term><term>Grippe humaine (épidémiologie)</term><term>Humains</term><term>Oiseaux</term><term>Phylogénie</term><term>Saisons</term><term>Variation génétique</term><term>Virus de la grippe A ()</term><term>Virus de la grippe A (génétique)</term><term>Virus recombinants (génétique)</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Influenza A virus</term></keywords><keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>Germany</term><term>Influenza, Human</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Influenza A virus</term><term>Reassortant Viruses</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Virus de la grippe A</term><term>Virus recombinants</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Grippe humaine</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Influenza, Human</term></keywords><keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr"><term>Allemagne</term><term>Grippe humaine</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Birds</term><term>Genetic Variation</term><term>Humans</term><term>Phylogeny</term><term>Seasons</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Animaux</term><term>Humains</term><term>Oiseaux</term><term>Phylogénie</term><term>Saisons</term><term>Variation génétique</term><term>Virus de la grippe A</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The outbreak of highly pathogenic avian influenza H5Nx viruses in winter 2016/2017 was the most severe HPAI epizootic ever reported in Germany. The H5N8 and H5N5 viruses detected in birds in Germany in 2016/2017 represent a reassortant swarm of at least five distinct genotypes, which carried closely related HA segments derived from clade 2.3.4.4b. The genotypes of these viruses and their spatio-temporal distribution indicated a unique situation with multiple independent entries of HPAIV into Germany.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">29311555</PMID><DateCompleted><Year>2018</Year><Month>11</Month><Day>21</Day></DateCompleted><DateRevised><Year>2019</Year><Month>01</Month><Day>08</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">2045-2322</ISSN><JournalIssue CitedMedium="Internet"><Volume>8</Volume><Issue>1</Issue><PubDate><Year>2018</Year><Month>01</Month><Day>08</Day></PubDate></JournalIssue><Title>Scientific reports</Title><ISOAbbreviation>Sci Rep</ISOAbbreviation></Journal><ArticleTitle>Swarm incursions of reassortants of highly pathogenic avian influenza virus strains H5N8 and H5N5, clade 2.3.4.4b, Germany, winter 2016/17.</ArticleTitle><Pagination><MedlinePgn>15</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1038/s41598-017-16936-8</ELocationID><Abstract><AbstractText>The outbreak of highly pathogenic avian influenza H5Nx viruses in winter 2016/2017 was the most severe HPAI epizootic ever reported in Germany. The H5N8 and H5N5 viruses detected in birds in Germany in 2016/2017 represent a reassortant swarm of at least five distinct genotypes, which carried closely related HA segments derived from clade 2.3.4.4b. The genotypes of these viruses and their spatio-temporal distribution indicated a unique situation with multiple independent entries of HPAIV into Germany.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Pohlmann</LastName><ForeName>Anne</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Starick</LastName><ForeName>Elke</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Grund</LastName><ForeName>Christian</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Höper</LastName><ForeName>Dirk</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Strebelow</LastName><ForeName>Günter</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Globig</LastName><ForeName>Anja</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Institute of Epidemiology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Staubach</LastName><ForeName>Christoph</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Institute of Epidemiology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Conraths</LastName><ForeName>Franz J</ForeName><Initials>FJ</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-7400-9409</Identifier><AffiliationInfo><Affiliation>Institute of Epidemiology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mettenleiter</LastName><ForeName>Thomas C</ForeName><Initials>TC</Initials><AffiliationInfo><Affiliation>Institute of Molecular Virology and Cell Biology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Harder</LastName><ForeName>Timm</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany. timm.harder@fli.de.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Beer</LastName><ForeName>Martin</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2018</Year><Month>01</Month><Day>08</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Sci Rep</MedlineTA><NlmUniqueID>101563288</NlmUniqueID><ISSNLinking>2045-2322</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D001717" MajorTopicYN="N">Birds</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014644" MajorTopicYN="N">Genetic Variation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005858" MajorTopicYN="N">Germany</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="N">epidemiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D006801" MajorTopicYN="N">Humans</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D009980" MajorTopicYN="N">Influenza A virus</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D007251" MajorTopicYN="N">Influenza, Human</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="N">epidemiology</QualifierName><QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016865" MajorTopicYN="N">Reassortant Viruses</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012621" MajorTopicYN="Y">Seasons</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2017</Year><Month>07</Month><Day>28</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2017</Year><Month>11</Month><Day>21</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2018</Year><Month>1</Month><Day>10</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2018</Year><Month>1</Month><Day>10</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2018</Year><Month>11</Month><Day>22</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">29311555</ArticleId><ArticleId IdType="doi">10.1038/s41598-017-16936-8</ArticleId><ArticleId IdType="pii">10.1038/s41598-017-16936-8</ArticleId><ArticleId IdType="pmc">PMC5758748</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Nat Commun. 2014 Jul 23;5:4448</Citation><ArticleIdList><ArticleId IdType="pubmed">25055345</ArticleId></ArticleIdList></Reference><Reference><Citation>Trop Anim Health Prod. 2017 Jun;49(5):1089-1093</Citation><ArticleIdList><ArticleId IdType="pubmed">28478526</ArticleId></ArticleIdList></Reference><Reference><Citation>Vet Microbiol. 2014 Jun 25;171(1-2):23-30</Citation><ArticleIdList><ArticleId IdType="pubmed">24745625</ArticleId></ArticleIdList></Reference><Reference><Citation>Emerg Infect Dis. 2017 Jun;23 (6):1048-1051</Citation><ArticleIdList><ArticleId IdType="pubmed">28518040</ArticleId></ArticleIdList></Reference><Reference><Citation>Emerg Infect Dis. 2017 Apr;23 (4):637-641</Citation><ArticleIdList><ArticleId IdType="pubmed">28169827</ArticleId></ArticleIdList></Reference><Reference><Citation>J Virol. 2015 Jun;89(12):6521-4</Citation><ArticleIdList><ArticleId IdType="pubmed">25855748</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2014 May 1;30(9):1312-3</Citation><ArticleIdList><ArticleId IdType="pubmed">24451623</ArticleId></ArticleIdList></Reference><Reference><Citation>Euro Surveill. 2015 Mar 26;20(12):null</Citation><ArticleIdList><ArticleId IdType="pubmed">25846491</ArticleId></ArticleIdList></Reference><Reference><Citation>Influenza Other Respir Viruses. 2015 Sep;9(5):271-6</Citation><ArticleIdList><ArticleId IdType="pubmed">25966311</ArticleId></ArticleIdList></Reference><Reference><Citation>Emerg Infect Dis. 2017 Feb;23 (2):359-360</Citation><ArticleIdList><ArticleId IdType="pubmed">27875109</ArticleId></ArticleIdList></Reference><Reference><Citation>Emerg Infect Dis. 2014 Aug;20(8):1315-8</Citation><ArticleIdList><ArticleId IdType="pubmed">25075453</ArticleId></ArticleIdList></Reference><Reference><Citation>Emerg Infect Dis. 2015 May;21(5):860-3</Citation><ArticleIdList><ArticleId IdType="pubmed">25897703</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2016 Oct 14;354(6309):213-217</Citation><ArticleIdList><ArticleId IdType="pubmed">27738169</ArticleId></ArticleIdList></Reference><Reference><Citation>Emerg Infect Dis. 2017 Sep;23 (9):1543-1547</Citation><ArticleIdList><ArticleId IdType="pubmed">28661831</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2006 Feb;23(2):254-67</Citation><ArticleIdList><ArticleId IdType="pubmed">16221896</ArticleId></ArticleIdList></Reference><Reference><Citation>Emerg Infect Dis. 2017 Apr;23 (4):633-636</Citation><ArticleIdList><ArticleId IdType="pubmed">28055819</ArticleId></ArticleIdList></Reference><Reference><Citation>Emerg Infect Dis. 2014 Jun;20(6):1087-9</Citation><ArticleIdList><ArticleId IdType="pubmed">24856098</ArticleId></ArticleIdList></Reference><Reference><Citation>Arch Virol. 2017 May;162(5):1381-1385</Citation><ArticleIdList><ArticleId IdType="pubmed">28138776</ArticleId></ArticleIdList></Reference><Reference><Citation>Emerg Infect Dis. 2017 Apr;23 (4):717-719</Citation><ArticleIdList><ArticleId IdType="pubmed">28117031</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>Allemagne</li></country></list><tree><country name="Allemagne"><noRegion><name sortKey="Pohlmann, Anne" sort="Pohlmann, Anne" uniqKey="Pohlmann A" first="Anne" last="Pohlmann">Anne Pohlmann</name></noRegion><name sortKey="Beer, Martin" sort="Beer, Martin" uniqKey="Beer M" first="Martin" last="Beer">Martin Beer</name><name sortKey="Conraths, Franz J" sort="Conraths, Franz J" uniqKey="Conraths F" first="Franz J" last="Conraths">Franz J. Conraths</name><name sortKey="Globig, Anja" sort="Globig, Anja" uniqKey="Globig A" first="Anja" last="Globig">Anja Globig</name><name sortKey="Grund, Christian" sort="Grund, Christian" uniqKey="Grund C" first="Christian" last="Grund">Christian Grund</name><name sortKey="Harder, Timm" sort="Harder, Timm" uniqKey="Harder T" first="Timm" last="Harder">Timm Harder</name><name sortKey="Hoper, Dirk" sort="Hoper, Dirk" uniqKey="Hoper D" first="Dirk" last="Höper">Dirk Höper</name><name sortKey="Mettenleiter, Thomas C" sort="Mettenleiter, Thomas C" uniqKey="Mettenleiter T" first="Thomas C" last="Mettenleiter">Thomas C. Mettenleiter</name><name sortKey="Starick, Elke" sort="Starick, Elke" uniqKey="Starick E" first="Elke" last="Starick">Elke Starick</name><name sortKey="Staubach, Christoph" sort="Staubach, Christoph" uniqKey="Staubach C" first="Christoph" last="Staubach">Christoph Staubach</name><name sortKey="Strebelow, Gunter" sort="Strebelow, Gunter" uniqKey="Strebelow G" first="Günter" last="Strebelow">Günter Strebelow</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Sante/explor/GrippeAllemagneV3/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000032 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000032 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Wicri/Sante
|area= GrippeAllemagneV3
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:29311555
|texte= Swarm incursions of reassortants of highly pathogenic avian influenza virus strains H5N8 and H5N5, clade 2.3.4.4b, Germany, winter 2016/17.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:29311555" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a GrippeAllemagneV3
| This area was generated with Dilib version V0.6.35. |  |